PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc03_g05370
Common NameGSCOC_T00026286001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 239aa    MW: 27041.7 Da    PI: 5.2537
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc03_g05370genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.24.1e-1087134454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++  rEr RR+++N++f+eL ++l +    +  K +K +iL  A++ +++L
  Cc03_g05370  87 SKACRERLRREKLNDRFAELCSILEPG---RPMKTDKLAILGDAIRILNQL 134
                  5678**********************8...89***************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.11E-1478150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.85E-781139No hitNo description
PROSITE profilePS5088813.14883134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-787134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-989140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-1291155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MERNSINNCC NAWEDIDLID INSFIDDVGL ANTDHPYAYW NQPQPPQSTG AELDASLTCA  60
TSQEKECAEV ECPRKRGRVD SCSRLGSKAC RERLRREKLN DRFAELCSIL EPGRPMKTDK  120
LAILGDAIRI LNQLKSEAQE YKEMNEKLSE EIKTLKADKN ELREEKLVLK ADKERMEQQL  180
KTMALPPSGY MAPHPAAYQP GLNKMPVFPG YSFVPMWQYL PPSARDTSQD HELRPPAA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00102PBMTransfer from AT4G14410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027116502.11e-178transcription factor bHLH104-like
SwissprotQ8L4675e-73BH104_ARATH; Transcription factor bHLH104
TrEMBLA0A068TV751e-177A0A068TV75_COFCA; Uncharacterized protein
STRINGXP_009775135.11e-106(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA47622132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14410.21e-75bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li X,Zhang H,Ai Q,Liang G,Yu D
    Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2478-93
    [PMID:26921305]
  3. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]
  4. Wang C,Yao X,Yu D,Liang G
    Fe-deficiency-induced expression of bHLH104 enhances Fe-deficiency tolerance of Arabidopsis thaliana.
    Planta, 2017. 246(3): p. 421-431
    [PMID:28451750]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  6. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]
  7. Min JH, et al.
    A basic helix-loop-helix 104 (bHLH104) protein functions as a transcriptional repressor for glucose and abscisic acid signaling in Arabidopsis.
    Plant Physiol. Biochem., 2019. 136: p. 34-42
    [PMID:30639920]