PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc03_g03160
Common NameGSCOC_T00025995001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 199aa    MW: 22092.6 Da    PI: 9.2788
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc03_g03160genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.86.2e-11249454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 +h ++Er+RR+++N+ +  Lr+l P     + k+ + a+i   ++e+Ik+L
  Cc03_g03160  2 SHIAVERNRRRQMNEHLKVLRSLTPCF---YIKRGDQASIIGGVIEFIKEL 49
                 89************************9...9******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.60E-11154No hitNo description
SuperFamilySSF474599.81E-16171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.589149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-12263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-8249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-10455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009913Biological Processepidermal cell differentiation
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MSHIAVERNR RRQMNEHLKV LRSLTPCFYI KRGDQASIIG GVIEFIKELH QVLQSLEAKK  60
RRMSLSPSPG PPGPSPRPVL LQLSPNSESS LGGHDKFKEV GTCCNSPVAD VEAKISGSNV  120
ILRTVSKRIP GQLSRIISVL EKFSFEILHL NISSMEDTVL YSFVIKIGLE CQLSLEELAM  180
EVQQSFRFQS VYAKETVG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016557389.11e-106PREDICTED: transcription factor MUTE
SwissprotQ9M8K65e-87MUTE_ARATH; Transcription factor MUTE
TrEMBLA0A068TSG51e-143A0A068TSG5_COFCA; Uncharacterized protein
STRINGSolyc01g080050.2.11e-103(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA113021821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.11e-85bHLH family protein