PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g39830
Common NameGSCOC_T00027660001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 420aa    MW: 45312.6 Da    PI: 4.9536
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g39830genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.6e-13234279454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YIk+L
  Cc02_g39830 234 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLSDAVAYIKEL 279
                  799***********************6.....4****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.6E-2869167IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.62E-18228292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.346230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.42E-15233280No hitNo description
Gene3DG3DSA:4.10.280.103.5E-17234294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10234279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-17236285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MDELIVSSPS SSSMVSSLPQ ESRPITTTAA SSSLQLNLQY ILQTQSDCWA YAIFWQSSND  60
QTDGQNDDGS VDCDVTDAEW FYVMSLAQSF FADDGAPGKA FSSGNLVWLT GGQQLQFYNC  120
QRAREAQIHG IETLVCIPTA GGVLELGSNA LIQDINWGLV QQAKSLFGPA ADMLEGAISF  180
ADFGLVSSFL ESSDSDCVVV VETTTRSHQV ERKGGVGGKK RGRKAGTGRE TPLNHVEAER  240
QRREKLNHRF YALRSVVPNV SRMDKASLLS DAVAYIKELK GKVDELESQL KRIEGNKKSV  300
KIEVADSNGN TTDNHSTTTA SSSSCSGGGG MSSNVQVEVK MVGTDAMVRV QSDSSGYPTA  360
RLMDAIRDLE LRVHHASMSH VNDLMLQDVV IRVPPNGAWA SEEGLKAALL GRFLGTDDR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-29228305279Transcription factor MYC2
5gnj_B3e-29228305279Transcription factor MYC2
5gnj_E3e-29228305279Transcription factor MYC2
5gnj_F3e-29228305279Transcription factor MYC2
5gnj_G3e-29228305279Transcription factor MYC2
5gnj_I3e-29228305279Transcription factor MYC2
5gnj_M3e-29228305279Transcription factor MYC2
5gnj_N3e-29228305279Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028122222.11e-145transcription factor MYC2-like
TrEMBLA0A068UJJ20.0A0A068UJJ2_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000140971e-139(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.15e-66bHLH family protein