PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g37070
Common NameGSCOC_T00028040001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family TCP
Protein Properties Length: 309aa    MW: 33190.5 Da    PI: 10.7193
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g37070genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.45.2e-38901982104
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasnsssg...... 88 
                  ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++      ++   s a++++s+      
  Cc02_g37070  90 PPKRTSTKDRHTKVEGRGRRIRMPATCAARVFQLTKELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsvngtLKVPTTSPAAADNSNtvkrkr 187
                  689*************************************************************7777733322221111111111111111111111 PP

          TCP  89 .....kaaksaakskksqksa 104
                                  s +++
  Cc02_g37070 188 krpsnY----------SADQH 198
                  111110..........11111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.4E-3294213IPR005333Transcription factor, TCP
PROSITE profilePS5136926.43696150IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGSAQKLELH GDQSRNGSNL NNPWPRPPST AVQPLRMPPA PPMAIPLISL KEEPDDHGED  60
KPPIPMARSS QPLPMPTPLQ MRQPVAPPTP PKRTSTKDRH TKVEGRGRRI RMPATCAARV  120
FQLTKELGHK SDGETIRWLL EHAEPAIIAA TGTGTVPAIA MSVNGTLKVP TTSPAAADNS  180
NTVKRKRKRP SNYSADQHVN MPTNTDDNVA TSTGNTSTSS TTTMSTFSSN NPSILAPLMA  240
IQPTNQSQIL AIPPNVNVNV TPFINVSARP ISAFIASSST TPSAANATRT QVLREFSLEI  300
HDKHEQQN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182189VKRKRKRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00638PBMTransfer from Lj0g3v0004489Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027103361.11e-175transcription factor TCP9-like
SwissprotQ9LT897e-62TCP19_ARATH; Transcription factor TCP19
TrEMBLA0A068UKS10.0A0A068UKS1_COFCA; Uncharacterized protein
STRINGVIT_15s0048g01150.t014e-77(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.16e-57TCP family protein