PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g34000
Common NameGSCOC_T00008655001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 345aa    MW: 38084.1 Da    PI: 6.2429
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g34000genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.1e-09165210555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h ++Er+RR+++   f+ L ++lP +     kK++K ++L  A++ +k+Lq
  Cc02_g34000 165 HIMAERKRRKHLGLLFSSLSSILPGL-----KKMDKTSVLGDAINQLKHLQ 210
                  999***********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-14158225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.459160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6165210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-12165222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-10166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDNSASSWFS AQEMEDHFLG DQCDIMNPFE EDLFGAFGDD LHNCDLPTKG NSSIFPIIET  60
NNSATRLCVS AAIEAPPIVT ERPTQLQNPN GCSWSTVYNF SSFDQPSSSP MLLTFGTLNP  120
GENKVCDVLS SNGSFVNFDH RTTRIQKRGK RTGGRTRSPS QTYDHIMAER KRRKHLGLLF  180
SSLSSILPGL KKMDKTSVLG DAINQLKHLQ EKVKTLEEQV TKQTVESVVL VKKSQRLVAD  240
DVSSDERGCN NNNQLLFPQI EAKVCDKEVL PKVHCENHQP GVLIKLLSKV ENLNLAVTNT  300
SVTPFGNSAL EVTIIAEMEK EFNMTTKELA KNLGSALHLV AQES*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073652.14e-98PREDICTED: transcription factor bHLH18-like
TrEMBLA0A068VBD60.0A0A068VBD6_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-38bHLH family protein