PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g27520
Common NameGSCOC_T00025082001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 329aa    MW: 35325.9 Da    PI: 8.4795
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g27520genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.9e-12256301655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR ri +++ +L+el P+     +k  + a++L +AveYIk+Lq
  Cc02_g27520 256 SIAERMRRTRISERMKKLQELFPNM----DKQTNTADMLDLAVEYIKDLQ 301
                  689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.443250300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-15253310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.56E-13254305No hitNo description
Gene3DG3DSA:4.10.280.101.1E-14255311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-9256301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-13256306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MKLEMNEVES NPSGMQQNRN GNGFCSSNSS SSTMVSVGYQ AAVCAGGGTV VGSYTVPLGV  60
ENQGQVRMNS NANGSNLIRQ SSSPAGFFSG FDAVGEVGNF RSGNGTNGEA SSSTGGLNNR  120
VNFNSGPSSS SRFMPSIAEN GNQNGGTGSS EHRQLGNGNE TNQGYVSSFL NDTWSDSPFN  180
SLKRNRDGDM KVYSSFNGSE NQDGGPRNQT PGLIHHLSLP KTAGEMAAIE KYMQFQQDSV  240
PCKIRAKRGC ATHPRSIAER MRRTRISERM KKLQELFPNM DKQTNTADML DLAVEYIKDL  300
QNQVQTLTET RAKCICSSKQ PQCSHPAV*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027106832.10.0transcription factor bHLH130-like
SwissprotQ66GR36e-58BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A068UHK50.0A0A068UHK5_COFCA; Uncharacterized protein
STRINGSolyc01g086870.2.11e-107(Solanum lycopersicum)
STRINGPGSC0003DMT4000650291e-107(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44352238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-59bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]