PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g19720
Common NameGSCOC_T00014546001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family LBD
Protein Properties Length: 190aa    MW: 20575.5 Da    PI: 8.1978
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g19720genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.38.8e-322103197
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C++lr++C+++C+l++ +     p++q++++ +v+k+FG++ ++++l+a+pe +r+++++sl+yeA+ r+ +Pv+G+vg+++++++ql+q+++e
  Cc02_g19720   2 SCNGCRILRKGCNENCILRQSLqgigsPQAQANATVFVAKFFGRAGLMSFLSAVPEPQRPALFQSLLYEACGRTVNPVSGVVGLLWTGNWQLCQSAVE 99 
                  6***********************************************************************************************99 PP

       DUF260  94 lall 97 
                  ++l+
  Cc02_g19720 100 TVLR 103
                  8775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.6921107IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-262100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MSCNGCRILR KGCNENCILR QSLQGIGSPQ AQANATVFVA KFFGRAGLMS FLSAVPEPQR  60
PALFQSLLYE ACGRTVNPVS GVVGLLWTGN WQLCQSAVET VLRGGVLRPM MNLPAEPQEA  120
VDHDDASEAS RLCLNLSARV TAGGRVKRRS ATPEESETST MESCYDYTAS NYYQNLKGGE  180
GTKLLRLFF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016539448.12e-79PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9SZE81e-62LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A068TPI61e-139A0A068TPI6_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000661654e-77(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.12e-63LOB domain-containing protein 39