PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g18940
Common NameGSCOC_T00014454001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 301aa    MW: 33533.8 Da    PI: 7.9242
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g18940genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.21.7e-1495138855
                  HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   Er RR++++s f++L++llP++     +K +K++i+ +Av+YI+sLq
  Cc02_g18940  95 TERERRKKMRSMFSNLQSLLPQL----PPKADKSTIVDEAVNYIRSLQ 138
                  7*********************6....39******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.79287137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1689150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-1692151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.72E-1492142No hitNo description
PfamPF000101.5E-1195138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-1195143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00442223273No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MSDGGSQDNF LWDNEVWALS NSDNSGRSDE NQPAKKFSES NNSNCPTPRE AEPRVGPSLG  60
KRKRKNGKQP SVEGNDQAAE GKGGAGADHE LHIWTERERR KKMRSMFSNL QSLLPQLPPK  120
ADKSTIVDEA VNYIRSLQQT LQRLQKQKLE MIRGLTTINY DPSMITPHRL AMDSREAFLA  180
DQGSSSQLSS NPNPLGVARF PTSFRTWATP NMVLNVCGDK AHINICCPKK LGLFSAICYF  240
LEKHKLEVVS AHVSSDNYRS LYMIQAQASG AVDHQYPEAF SFDDIFHLAT GEMMMYMSSL  300
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282369.11e-115PREDICTED: transcription factor bHLH95
TrEMBLA0A068TLM00.0A0A068TLM0_COFCA; Uncharacterized protein
STRINGVIT_03s0063g00170.t011e-114(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.15e-43bHLH family protein