PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g17440
Common NameGSCOC_T00014259001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 433aa    MW: 47647.4 Da    PI: 6.7472
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g17440genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.7e-10241288455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Cc02_g17440 241 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 288
                  8**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.29E-10235292No hitNo description
SuperFamilySSF474596.54E-17235306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-17237304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.618237287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-7241288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9243293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MSVLERQEAI WMKWQEEQLH HPPPLPLQVR QLGHDFFNST DQLNVFSSPA QAHHHFHGFI  60
TNDHHFSGLL TQGILKQDPG VQTTTGCDNF TNIGGPSAGL GACELGNITG FGMDYAVSRT  120
VSCPPAMAAA MADVATAASK GRETTLPEKL SSSAGRESFK KRKADKTQNQ KEATEQEGKD  180
KRSRGCQKEE DSKVTEQKST SKNTATNNTI NREASENSKI SEVQKPDYIH VRARRGQATD  240
SHSLAERVRR EKISERMKYL QDLVPGCNKI TGKAGMLDEI INYVQSLQRQ VEFLSMKLAA  300
INPRLDFNIG DISTKEIFAV GTSELHTIGS TSEIINPLNY PFDSIQQVVS CCGLETGADP  360
SEMALRRTIS APVSIHETLR DSPYFSQIHP SSTWDAELQS LYALEFQQGK STSLLSQPCT  420
GYLGGSNVKM EI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236908.11e-139PREDICTED: transcription factor bHLH63
TrEMBLA0A068TL360.0A0A068TL36_COFCA; Uncharacterized protein
STRINGVIT_03s0038g04760.t011e-135(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65382330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.13e-58cryptochrome-interacting basic-helix-loop-helix 1