PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g13700
Common NameGSCOC_T00029111001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 252aa    MW: 26893.1 Da    PI: 8.9273
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g13700genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-201969256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g+
  Cc02_g13700 19 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRGA 69
                 58*******.**********8...557*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-141968IPR001471AP2/ERF domain
CDDcd000188.65E-181976No hitNo description
Gene3DG3DSA:3.30.730.101.5E-321976IPR001471AP2/ERF domain
PROSITE profilePS5103223.8941976IPR001471AP2/ERF domain
SMARTSM003804.2E-391982IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-221977IPR016177DNA-binding domain
PRINTSPR003675.3E-112031IPR001471AP2/ERF domain
PRINTSPR003675.3E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAPRDKAASA NPGIAKEMHF RGVRKRPWGR YAAEIRDPGK KSRVWLGTFD TAEEAARAYD  60
AAAREFRGAK AKTNFPLPEE HNGNLSQNIP SSQSSTVESS SREAFSPVVA VADSSSSPLD  120
LSLGGSMNVK FAFPNQNQQQ FRLSPFAGRF AGVMQPPAVN ASRAFFFDAL ARHAMVKPDH  180
SVLNPHRVTV AVDFLGVGAA AAAAGAIGVQ SESDSSSVEV DLNRADVKPL KTTYELNLDL  240
DLNLPPPSEN A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-221577164ATERF1
3gcc_A7e-221577164ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027161774.11e-124ethylene-responsive transcription factor 4-like
TrEMBLA0A068TTX60.0A0A068TTX6_COFCA; Uncharacterized protein
STRINGXP_009618542.15e-59(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.14e-26erf domain protein 9