PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g13460
Common NameGSCOC_T00029149001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 175aa    MW: 19619.3 Da    PI: 8.4827
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g13460genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.7e-111259555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  + +Er RR+r+++ +++L +l+P++   + +  s  + Le+A++YIk++q
  Cc02_g13460 12 RKTIERDRRNRMKTLYSKLTSLIPPQ---SREASSLPDQLEEATNYIKKMQ 59
                 6789*********************9...8888****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.23E-5563No hitNo description
PROSITE profilePS5088810.677758IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-11972IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-10970IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-71359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00461364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MEQNPSSSKA DRKTIERDRR NRMKTLYSKL TSLIPPQSRE ASSLPDQLEE ATNYIKKMQI  60
KLEKLKERRD FTNGTRLSSD TDTASAGLRL PHIDIQERGS ALEVVLITKS DCQFMFTETI  120
RLLHEEGAEV VNASFSVLGE TIFHTVHCKI GESAPCSAAA RISEKLKKFV YGDN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007214498.14e-71hypothetical protein PRUPE_ppa018726mg
TrEMBLA0A068TTE21e-127A0A068TTE2_COFCA; Uncharacterized protein
STRINGPOPTR_0011s05320.12e-69(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51052131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-41bHLH family protein