PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g11910
Common NameGSCOC_T00029357001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 213aa    MW: 23905.4 Da    PI: 5.2027
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g11910genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.61.4e-055089555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 + e+Er+RR+++ +++ eLr+l+            Ka+i + A++YI +Lq
  Cc02_g11910 50 NLEAERKRRRKLSDRLLELRSLMN-----------KATIITDAIDYIEELQ 89
                 5689*****************975...........559***********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-1243104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.22E-114493No hitNo description
Gene3DG3DSA:4.10.280.103.6E-845103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.4074598IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-75194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGGCPTNSNK KIPSSPSLSP TMMAGLGDSP YDDYCASECE DEHKEFKSKN LEAERKRRRK  60
LSDRLLELRS LMNKATIITD AIDYIEELQN TVRDLSDQLC QMDITLKEDM ESQNKYVTDP  120
AKEMKNWGIE TEVKVTRLNG AKLWIQVVFQ KKIGGFTKLM EAISVIGYDP KDVSVTTVKG  180
ALCVTSCVEA IHDGCVEVDQ IKNFLLETTR RI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15360ERKRRRKL
25458RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009597290.12e-61PREDICTED: transcription factor DYSFUNCTIONAL TAPETUM 1 isoform X1
TrEMBLA0A068TTZ71e-158A0A068TTZ7_COFCA; Uncharacterized protein
STRINGSolyc02g079810.1.17e-55(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91071622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.11e-25bHLH family protein