PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g11750
Common NameGSCOC_T00029375001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 246aa    MW: 27686.2 Da    PI: 5.7774
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g11750genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.18.7e-0581135654
                  HHHHHHHHHHHHHHH.HHHHCTSCC.C.......TTS-STCHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsaf.eeLrellPk.as....kapskKlsKaeiLekAveYIksL 54 
                    rE+ RRd++N++    L   l + +s     ++ +K++K++iL  A++ + +L
  Cc02_g11750  81 AYREKMRRDKLNDRQtLSLSLYLFQeLSflldPERPPKVDKSAILGDATRMLIQL 135
                  579**********84445555555533355555599*************998877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.41E-875155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-880157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.81E-583140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MASPEEDSNW VFDFGLIEDI PVPGGDLPPL DPGFQNWSNN SFYNPNSVEL DGAFQSSQSR  60
KEASSRKRAR SGPCSATDSK AYREKMRRDK LNDRQTLSLS LYLFQELSFL LDPERPPKVD  120
KSAILGDATR MLIQLRDEAE KLKESYERLQ EKVNELKAEK NELRDEKQKQ KAEKDKLEHQ  180
LKALSSQTGF LSNPSAILAP FVAPHQVFSS KMTPFVGYPG TSMWHFMPPA AVDTSEDHVL  240
RPPVA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027111604.11e-171transcription factor bHLH115-like
RefseqXP_027154883.11e-171transcription factor bHLH115-like
RefseqXP_027163287.11e-171transcription factor bHLH115-like
SwissprotQ9C6826e-67BH115_ARATH; Transcription factor bHLH115
SwissprotQ9FH378e-67ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A068TUM61e-180A0A068TUM6_COFCA; Uncharacterized protein
STRINGXP_008224874.11e-105(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9502482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51070.11e-53bHLH family protein
Publications ? help Back to Top
  1. Li X,Zhang H,Ai Q,Liang G,Yu D
    Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2478-93
    [PMID:26921305]
  2. Aparicio F,Pallás V
    The coat protein of Alfalfa mosaic virus interacts and interferes with the transcriptional activity of the bHLH transcription factor ILR3 promoting salicylic acid-dependent defence signalling response.
    Mol. Plant Pathol., 2017. 18(2): p. 173-186
    [PMID:26929142]
  3. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]
  6. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]
  7. Samira R, et al.
    The bHLH transcription factor ILR3 modulates multiple stress responses in Arabidopsis.
    Plant Mol. Biol., 2018. 97(4-5): p. 297-309
    [PMID:29882068]