PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g11750
Common NameGSCOC_T00029375001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 246aa    MW: 27686.2 Da    PI: 5.7774
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g11750genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.18.7e-0581135654
                  HHHHHHHHHHHHHHH.HHHHCTSCC.C.......TTS-STCHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsaf.eeLrellPk.as....kapskKlsKaeiLekAveYIksL 54 
                    rE+ RRd++N++    L   l + +s     ++ +K++K++iL  A++ + +L
  Cc02_g11750  81 AYREKMRRDKLNDRQtLSLSLYLFQeLSflldPERPPKVDKSAILGDATRMLIQL 135
                  579**********84445555555533355555599*************998877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.41E-875155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-880157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.81E-583140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MASPEEDSNW VFDFGLIEDI PVPGGDLPPL DPGFQNWSNN SFYNPNSVEL DGAFQSSQSR  60
KEASSRKRAR SGPCSATDSK AYREKMRRDK LNDRQTLSLS LYLFQELSFL LDPERPPKVD  120
KSAILGDATR MLIQLRDEAE KLKESYERLQ EKVNELKAEK NELRDEKQKQ KAEKDKLEHQ  180
LKALSSQTGF LSNPSAILAP FVAPHQVFSS KMTPFVGYPG TSMWHFMPPA AVDTSEDHVL  240
RPPVA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008224874.11e-106PREDICTED: transcription factor ILR3-like
SwissprotQ9C6824e-68BH115_ARATH; Transcription factor bHLH115
SwissprotQ9FH376e-68ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A068TUM60.0A0A068TUM6_COFCA; Uncharacterized protein
STRINGPOPTR_0011s03360.12e-98(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9502482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51070.11e-53bHLH family protein