![]() |
Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
|
Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cc02_g07490 | ||||||||
Common Name | GSCOC_T00029932001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 220aa MW: 24500.6 Da PI: 4.0256 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 118.4 | 4.1e-37 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrr+C+ +Cv+apyf eq +++f++vh++FGasnv+kll +lp ++r +a+ ++ yeA ar++dP+yG+v++i++l+qq+++lk+e++++ Cc02_g07490 7 SCGACKFLRRRCTIECVFAPYFGYEQaASHFEAVHRVFGASNVSKLLLNLPVQNRAEAAITISYEALARMQDPIYGCVAHIFALEQQVACLKEEIEMI 104 6***********************9978*******************************************************************998 PP DUF260 98 kee 100 +++ Cc02_g07490 105 ETQ 107 876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.139 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-35 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 220 aa Download sequence Send to blast |
MTGMGSSCGA CKFLRRRCTI ECVFAPYFGY EQAASHFEAV HRVFGASNVS KLLLNLPVQN 60 RAEAAITISY EALARMQDPI YGCVAHIFAL EQQVACLKEE IEMIETQMAS LAVDVTSSCE 120 SYNVADYSNP EIAFGCDQYM NLANFINQQQ MELDPITYTE VKACDDSQMM VQFPPGNGWE 180 DAISQLSSSN SNLSEPLFQE FTQSIYEQCL WPEYCSTLN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011002633.1 | 3e-76 | PREDICTED: LOB domain-containing protein 29-like | ||||
Swissprot | Q9LHS8 | 4e-55 | LBD33_ARATH; LOB domain-containing protein 33 | ||||
TrEMBL | A0A068TXQ6 | 1e-164 | A0A068TXQ6_COFCA; Uncharacterized protein | ||||
STRING | POPTR_0010s20800.1 | 1e-74 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12769 | 15 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06080.1 | 2e-56 | LOB domain-containing protein 33 |