PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g07490
Common NameGSCOC_T00029932001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family LBD
Protein Properties Length: 220aa    MW: 24500.6 Da    PI: 4.0256
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g07490genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.44.1e-3771071100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrr+C+ +Cv+apyf  eq +++f++vh++FGasnv+kll +lp ++r +a+ ++ yeA ar++dP+yG+v++i++l+qq+++lk+e++++
  Cc02_g07490   7 SCGACKFLRRRCTIECVFAPYFGYEQaASHFEAVHRVFGASNVSKLLLNLPVQNRAEAAITISYEALARMQDPIYGCVAHIFALEQQVACLKEEIEMI 104
                  6***********************9978*******************************************************************998 PP

       DUF260  98 kee 100
                  +++
  Cc02_g07490 105 ETQ 107
                  876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.1396108IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-357105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MTGMGSSCGA CKFLRRRCTI ECVFAPYFGY EQAASHFEAV HRVFGASNVS KLLLNLPVQN  60
RAEAAITISY EALARMQDPI YGCVAHIFAL EQQVACLKEE IEMIETQMAS LAVDVTSSCE  120
SYNVADYSNP EIAFGCDQYM NLANFINQQQ MELDPITYTE VKACDDSQMM VQFPPGNGWE  180
DAISQLSSSN SNLSEPLFQE FTQSIYEQCL WPEYCSTLN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002633.13e-76PREDICTED: LOB domain-containing protein 29-like
SwissprotQ9LHS84e-55LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A068TXQ61e-164A0A068TXQ6_COFCA; Uncharacterized protein
STRINGPOPTR_0010s20800.11e-74(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127691521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.12e-56LOB domain-containing protein 33