PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g06230
Common NameGSCOC_T00039149001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 357aa    MW: 38087.4 Da    PI: 6.0238
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g06230genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-1775124255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a+  l+g
  Cc02_g06230  75 RYRGVRQRS-WGKWVAEIREPRK---RTRRWLGTFATAEDAARAYDRAAIILYG 124
                  59****999.**********954...5999*******************98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.3E-3775138IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2075133IPR016177DNA-binding domain
CDDcd000181.01E-2075132No hitNo description
PfamPF008472.6E-1175120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-2975132IPR001471AP2/ERF domain
PROSITE profilePS5103222.33975132IPR001471AP2/ERF domain
PRINTSPR003673.6E-107687IPR001471AP2/ERF domain
PRINTSPR003673.6E-1098114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009744Biological Processresponse to sucrose
GO:0009749Biological Processresponse to glucose
GO:0010119Biological Processregulation of stomatal movement
GO:0010353Biological Processresponse to trehalose
GO:0010449Biological Processroot meristem growth
GO:0010896Biological Processregulation of triglyceride catabolic process
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0032880Biological Processregulation of protein localization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MSNSTADHLT SHLSQDTDPT LNYSISNNNN SDNATAAAAN ATTTSSGSDL SSGSTSSNNN  60
KKGKGKGGPD NNKFRYRGVR QRSWGKWVAE IREPRKRTRR WLGTFATAED AARAYDRAAI  120
ILYGSRAQLN LQPSSGTGGE SGGAPSDQSS SRSSNSSSST QNLRPLLPRP SGFGLTFYSA  180
PASLPVAGGV VAGYAPYGYY PATVQQYPNM VQCQQNLALQ EPQPQRQQPE EYRTSTTARC  240
HDMNVVLGIV DSSSYITTTS GANPNHEQQQ QEQQYCHNPS KLLYDEVNSL VGSVGSSLSL  300
CCTQTVAAAP APSVSECSDP TVSGCPGSPP LWPLTNDDEY PPTSIWDYGD PSVFDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1876131359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027101339.10.0ethylene-responsive transcription factor ABI4-like
RefseqXP_027108651.10.0ethylene-responsive transcription factor ABI4-like
TrEMBLA0A068V0A10.0A0A068V0A1_COFCA; Uncharacterized protein
STRINGXP_006486528.11e-71(Citrus sinensis)
STRINGXP_006435774.11e-71(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.11e-23ERF family protein