PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g05620
Common NameGSCOC_T00039075001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family LBD
Protein Properties Length: 238aa    MW: 25914.7 Da    PI: 8.8692
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g05620genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601185.7e-3754151197
       DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +CaaCk +rr+C+++ C+++pyfp ++p +fa vh++FGasnv+k+l+++pe+ r +++ slvyeA+ar+rdPvyG+++ i++lq+q+e+l+++l+++
  Cc02_g05620  54 PCAACKQMRRRCSAKkCPFSPYFPPSEPLRFASVHRVFGASNVSKMLAEVPESLRAEVAISLVYEADARLRDPVYGCTAEISALQRQVESLQQQLNSA 151
                  7***********8655******************************************************************************9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.75253155IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-3754150IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MIISHFTKKR KKEKKDHGTS LIIDHYFFFS FFGGDGIRRG SSVLPGRCLS VIRPCAACKQ  60
MRRRCSAKKC PFSPYFPPSE PLRFASVHRV FGASNVSKML AEVPESLRAE VAISLVYEAD  120
ARLRDPVYGC TAEISALQRQ VESLQQQLNS AWDELLKYKN PHHEADIFNA EPPPSHDVAL  180
LPSVATTAAF PPPPSPTVLL VPPPPPTSSG SLLLSSSASS NQYCPLSAAA DFSTISN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1711KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279029.12e-54PREDICTED: LOB domain-containing protein 15
SwissprotQ9AT612e-50LBD13_ARATH; LOB domain-containing protein 13
TrEMBLA0A068UZS71e-174A0A068UZS7_COFCA; Uncharacterized protein
STRINGVIT_13s0067g02380.t016e-54(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.12e-51LOB domain-containing protein 13