PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g01870
Common NameGSCOC_T00020024001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 339aa    MW: 37041.7 Da    PI: 4.844
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g01870genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.3e-13115166155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h  +Er+RR+++N+ +  Lr+l+P     + k+ + a+i   +v+YI++Lq
  Cc02_g01870 115 QRMSHITVERNRRKQMNEHLTVLRSLMPCF---YVKRGDQASIIGGVVDYINELQ 166
                  79***************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.68E-13112170No hitNo description
PROSITE profilePS5088814.945114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-13115177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-17115188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-10120171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDGENLSELF EFDETNLAGP TSPDDIFSVL EALEGVSDFN EMTPLDEAAG GSNPKDRGDQ  60
ETGSTRLVSQ KSTSSSALQE SENELETSQK SKRRKLTVEP TATASSEEPN IDGLQRMSHI  120
TVERNRRKQM NEHLTVLRSL MPCFYVKRGD QASIIGGVVD YINELQQVLQ SLEAKKQRKV  180
YSEVLSPRLV SSPRSSPLSP RKPPLSPRLS LPISPRTPQP SSPYKPRLQQ HGLPSPCSSS  240
TSSTVDSVNE LVANSKSAIA EVEVKFSGPN VLLKTLSPRL PGQVVKIVSA IEDLSLEILQ  300
VEMSATDQTM INSFTIKIGI ECQLSAEELA QQIQQTFC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115126RMSHITVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007038955.11e-154Basic helix-loop-helix DNA-binding superfamily protein
SwissprotQ700C71e-109SPCH_ARATH; Transcription factor SPEECHLESS
TrEMBLA0A068UBR90.0A0A068UBR9_COFCA; Uncharacterized protein
STRINGGLYMA04G41710.11e-141(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73572231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.12e-51bHLH family protein