PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g18590
Common NameGSCOC_T00016185001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 471aa    MW: 52094.4 Da    PI: 5.4082
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g18590genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.8e-13324370455
                  HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Cc01_g18590 324 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITDLQ 370
                  799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.9E-4449227IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.806320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-18323388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.14E-15323374No hitNo description
Gene3DG3DSA:4.10.280.103.6E-18324389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-10324370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-15326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MGEKFWLIEE DKALVESVLG AEAVQFFVWL ASSNILSEFA APAGVAGVQD GLSKVVEGSD  60
WTYAIYWQVS TSKSGKSALI WGDGHCRDPR GTEKMDGNDY RDQRFAGGDR RKQALQKIHA  120
CFGGAEDDNV AAKLDSVSEL EMFYLTSMYY AFPFDKPSTP SQAFNTSRTI WVSDPRSCSE  180
NYQSRASLAK SARIETVVFV PFKSGVVEIG SGKSLSEDPN VVQMVKTSIT PNVVHPKTAP  240
KIFGQELSLG GGKSGPISIS FSPKVEDDSL FVSDSYELQA LAGYGPSNGY RSDDGEDDSL  300
MLSDDRRPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG  360
DAIAYITDLQ KKIRIMEAER EMVNDRQKQP AVTDIDLQER HEDAVVQVSC PLDVHPVSRV  420
IKAMREHQIV AQESDVSLTE NGEVVHTFSI RTQGGDAEHL KEKLTTALFN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-15482329195Transcription factor MYC3
4rqw_B8e-15482329195Transcription factor MYC3
4rs9_A8e-15482329195Transcription factor MYC3
4yz6_A8e-15482329195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305313RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016457175.10.0PREDICTED: transcription factor bHLH3-like
RefseqXP_016457174.10.0PREDICTED: transcription factor bHLH3-like
SwissprotO234871e-162BH003_ARATH; Transcription factor bHLH3
TrEMBLA0A068U6220.0A0A068U622_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000516710.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66692433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-151bHLH family protein