PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g09290
Common NameGSCOC_T00023979001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bZIP
Protein Properties Length: 502aa    MW: 55611.6 Da    PI: 7.0026
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g09290genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1331.3e-10197233440
                  XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 
                   k  rr+++NReAAr+sR+RKka++++Le+    L++
  Cc01_g09290 197 AKTLRRLAQNREAARKSRLRKKAYVQQLETSRIRLTQ 233
                  6889*************************86655555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.9E-7192271IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.117196240IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.4E-8196240No hitNo description
PfamPF001701.0E-7197238IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.53E-6198240No hitNo description
PROSITE patternPS000360201216IPR004827Basic-leucine zipper domain
PfamPF141441.6E-32279354IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MASQRVGEAG FSNSGPSHHH HHNTMPYAVF RGLNPPSTSF INQEGSAFDF GELEEAIVLQ  60
GVKINNDEAK TPLYAATVRP AATLEMFPSW PTRLIQTPRG SSKSGEESTD SGSAVNTLSS  120
RAEARLEPES PISKKSSLEP QGLEQKHLQL PNEQQQLEMA NDGSRVEMPQ DHQPAGGKPT  180
TEKRRGPGST SEKVLDAKTL RRLAQNREAA RKSRLRKKAY VQQLETSRIR LTQLEQDLQR  240
ARAQGFFLGG GGAPGGNISS GAAIFDMEYA RWLDDDHRHM SELRTALQAH LSDGDMRVIV  300
DGYIAHYDEI FRLKGVAAKS DVFHLITGMW TTPAERCFLW MGGFRPSELI KMLITQLDPL  360
TEQQVVGIYG LQHSSQQAEE ALSQGLEQLQ QSLIETIAGG TVNDGMHHMA VALGKLTNLE  420
GFVRQADNLR QQTLHHLLRI LTVRQVARCF LVIGEYYGRL RALSSLWASR PRETMIGDEN  480
SCQTTTDLQM VQSSQNQFAN F*
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00131DAPTransfer from AT1G08320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027083660.10.0transcription factor TGA9-like isoform X1
RefseqXP_027185250.10.0transcription factor TGA9
SwissprotQ93XM60.0TGA9_ARATH; Transcription factor TGA9
TrEMBLA0A068UFE70.0A0A068UFE7_COFCA; Uncharacterized protein
STRINGEOY334490.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36832340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.30.0bZIP family protein
Publications ? help Back to Top
  1. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  2. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]