PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g07860
Common NameGSCOC_T00015461001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family YABBY
Protein Properties Length: 187aa    MW: 20809.5 Da    PI: 8.6964
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g07860genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY229.86.9e-7121582170
        YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 
                  +++ +se+vCyv+CnfCntilavsvP +s+f +vtvrCGhC++llsvn+    q+l++++  ++  k+++           +  ++++ s+s+ ++ +
  Cc01_g07860   2 SMDITSERVCYVHCNFCNTILAVSVPCSSMFAIVTVRCGHCANLLSVNVGALPQTLPTQDL-QKLQKQQIN---------NEDATKESGSSSKCNKFT 89 
                  67789*****************************************************993.332222222.........222222233333333333 PP

        YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     ++ +++ pr+ p irPPekrqrvPsaynrfikeeiqrikasnP+ishreafs+aaknWahfP+ihfgl
  Cc01_g07860  90 P-FDSAEHDQPRITP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPHIHFGL 158
                  3.3567788899999.9****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.2E-746158IPR006780YABBY protein
SuperFamilySSF470952.36E-899152IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.105.4E-5106152IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MSMDITSERV CYVHCNFCNT ILAVSVPCSS MFAIVTVRCG HCANLLSVNV GALPQTLPTQ  60
DLQKLQKQQI NNEDATKESG SSSKCNKFTP FDSAEHDQPR ITPIRPPEKR QRVPSAYNRF  120
IKEEIQRIKA SNPEISHREA FSTAAKNWAH FPHIHFGLKV DGNKQANKLD HPDAGDQGAQ  180
KSRGFY*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6677578e-58KJ667757.1 Solanum virginianum FAS protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027105194.11e-140putative axial regulator YABBY 2 isoform X1
SwissprotQ9XFB05e-78YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A068V4S51e-138A0A068V4S5_COFCA; Uncharacterized protein
STRINGVIT_06s0009g00880.t011e-104(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38124163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.12e-80YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]