PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g29370
Common NameGSCOC_T00012746001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 178aa    MW: 20354.4 Da    PI: 8.3747
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g29370genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH277.8e-0957104455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR +iN+++  L++++P +    +k +  a +L + ++Y++sLq
  Cc00_g29370  57 SHSLAERVRRGKINERLRCLQDIVPGC----HKTMGMAVMLDEIINYVQSLQ 104
                  8*************************9....788*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-1751120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.20E-951108No hitNo description
PROSITE profilePS5088815.00853103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-1653115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-657104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-859109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
FNLFHSHLFE VELTCLYCLQ CSQITGKGKR IRSNRKDEEK PKEVVHVRAK RGQATDSHSL  60
AERVRRGKIN ERLRCLQDIV PGCHKTMGMA VMLDEIINYV QSLQNQVEFL SMKLTAASNF  120
YDFNRETDTI DTLQRAKAFE AMKMQKLMKE EFDGVPSTQV GPLDQTFGCY PSLPFNT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252234.12e-81PREDICTED: transcription factor BEE 1-like
SwissprotQ8GZ135e-61BEE1_ARATH; Transcription factor BEE 1
TrEMBLA0A068VLW71e-132A0A068VLW7_COFCA; Uncharacterized protein (Fragment)
STRINGSolyc12g036470.1.15e-81(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39712344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.13e-62BR enhanced expression 1