PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g27610
Common NameGSCOC_T00003289001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 154aa    MW: 17798.9 Da    PI: 5.0725
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g27610genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.7e-114992553
                 HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS
          HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53
                 + e Er+RR+++ + ++ Lr ++P+ +      K++Ka+i + A+ YI++
  Cc00_g27610 49 NIESERKRRQKLTETLHALRAVVPNiS------KMDKASIIKDAICYIQQ 92
                 5689*********************66......***************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.55E-1644110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.5454493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.98E-94798No hitNo description
PfamPF000101.4E-84992IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-1450111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-125099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MDDMDVVYKY YWENMILQTE QLGRNFDESF SFYDSSSPDG AQSSAASKNI ESERKRRQKL  60
TETLHALRAV VPNISKMDKA SIIKDAICYI QQFHNQERMI QAEISELESK RSIFLDFDQE  120
ISYNSKPKRS RFEQTCDSAK SRSSPIEVFE VGL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15257ERKRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094110.12e-53PREDICTED: transcription factor bHLH35
SwissprotQ700E39e-35BH027_ARATH; Transcription factor bHLH27
TrEMBLA0A068VL501e-111A0A068VL50_COFCA; Uncharacterized protein
STRINGGLYMA15G18070.12e-51(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.43e-32bHLH family protein