PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g15720
Common NameGSCOC_T00006890001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family LBD
Protein Properties Length: 65aa    MW: 7055.3 Da    PI: 9.5874
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g15720genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26048.33e-15463155
       DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeere 55
                 +C++C+vlr++C+++C + p++     p++q++++ +++k++G++ +++l++a pe+ r+
  Cc00_g15720  4 SCNGCRVLRKGCSENCSIKPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRP 63
                 6*****************************************************999885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089111.506364IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-11462IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 65 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IKPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH  60
LRPG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6239102e-53AB623910.1 Camellia sinensis DNA, SSR marker, MSE0196.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077976.13e-40PREDICTED: LOB domain-containing protein 40
SwissprotQ9M8863e-40LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A068VH518e-42A0A068VH51_COFCA; Uncharacterized protein
STRINGPOPTR_0004s09920.12e-39(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2195922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-41LOB domain-containing protein 41