PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g07200
Common NameGSCOC_T00006852001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 237aa    MW: 26733.2 Da    PI: 5.4591
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g07200genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.39e-114993554
                 HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                 + e Er+RR+++ ++++  r ++P+ +      K++Ka+i + A++YI++L
  Cc00_g07200 49 NIESERKRRKKLTERLHAVRAVVPNiS------KMDKASIIKDAIDYIQEL 93
                 5689*********************66......****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.07E-1644110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.6634493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.47E-104798No hitNo description
PfamPF000102.5E-84993IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-1450111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-125099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MADIDVAYKY YWENMFLQTE QLASYFDESF SFHDSNSPDG AQSSAASKNI ESERKRRKKL  60
TERLHAVRAV VPNISKMDKA SIIKDAIDYI QELHNQERVI QAEISELESK RSIFLDFDEE  120
RSCNSKSKRS RFEQTCDSVG SRSSPIEVLE LRVSHIGQKT IVVSLACSKR TDTIVKICEV  180
FESLNLKIIT ANITAFSGRL LNTVFLEANE EEKDVLKIKI QTAIAALNDP DSPTSV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15259ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008223870.11e-111PREDICTED: transcription factor bHLH35
SwissprotQ2HIV92e-78BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A068VEJ61e-173A0A068VEJ6_COFCA; Uncharacterized protein
STRINGVIT_11s0052g00100.t011e-110(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-74bHLH family protein