PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g06580
Common NameGSCOC_T00005835001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family TCP
Protein Properties Length: 409aa    MW: 42329.6 Da    PI: 8.0279
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g06580genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.76e-40942053115
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaakskk 99 
                  ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLl qa+pai+++tgt++++a+++  ++s +ss+   ++++  +++a+   
  Cc00_g06580  94 VAKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLHQAEPAIIAATGTGTIPANFSsLNVSLRSSGT--TISAPPSKSAPLFL 189
                  6899****************************************************************99976777777766..44444444445555 PP

          TCP 100 sqksaasalnlakesr 115
                     sa+++l ++++  
  Cc00_g06580 190 HGGSATAMLGFHHQLG 205
                  5555555565555444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.95499153IPR017887Transcription factor TCP subgroup
PfamPF036343.4E-3899233IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MEFMEPHSKN QANTSNTSAS DHHHAPQQQE PGGPGSGQAA PVGGHGPFMG SISMHSRNLL  60
SSSSTPSSTT TTPTTTTAPS TASNNNNNSS GNKVAKKPSK DRHTKVDGRG RRIRMPALCA  120
ARVFQLTREL GHKSDGETIE WLLHQAEPAI IAATGTGTIP ANFSSLNVSL RSSGTTISAP  180
PSKSAPLFLH GGSATAMLGF HHQLGNTGFA QDPDENYMKK RFREDTTGAT SPSAAKPERA  240
GVQDHEPGSE AKTGLAQHSG FIPAQAMWAV APAAAASVGS TFWMLPAGTT MSAAAGSGGG  300
GGGSQQDHQL WQYKAAPTAM QRIGGYDFSG GGRFTPVQLG SMVLQQSQPV QQLGLGVSET  360
NMGMLASLNA YSGGGGSRVD LGMNLEQHHH QSQPQGSDSG DENPKDSQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027094718.10.0transcription factor TCP23-like
TrEMBLA0A068VGS00.0A0A068VGS0_COFCA; Uncharacterized protein
STRINGXP_009775051.11e-170(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.17e-65TCP family protein