PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033679m
Common NameCICLE_v10033679mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-YC
Protein Properties Length: 144aa    MW: 16323.8 Da    PI: 9.0857
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033679mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC60.24.4e-196941097
            NF-YC 10 iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                      e++t+  + e+P+ r+kki+k ded++++++ea  ++s++ elf+  l+ +s   a e+kr+t+k  d+  av+r   + dfl+d  p
  Ciclev10033679m  6 EEQNTETTRPEFPVGRVKKIMKLDEDINKVTSEALFVVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVAVKRHRpTSDFLLDSLP 94
                     689999999*****************************************************************9975389*****987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.83E-19795IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.6E-20979IPR009072Histone-fold
PfamPF008084.9E-191679IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MAEEAEEQNT ETTRPEFPVG RVKKIMKLDE DINKVTSEAL FVVSRSTELF LRFLAEKSAE  60
AAIEKKRKTI KLGDMRVAVK RHRPTSDFLL DSLPLPIQSL DRPATGKARS RPAVEKPLPV  120
GTRRIDRFFH KPENEVPVEI EDD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438038.12e-98hypothetical protein CICLE_v10033679mg
TrEMBLV4STV93e-98V4STV9_9R
STRINGVIT_01s0010g03550.t015e-59(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128602530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.11e-39nuclear factor Y, subunit C13