PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033428m
Common NameCICLE_v10033428mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 436aa    MW: 49287.1 Da    PI: 6.3844
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033428mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.7e-12249296254
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      r+++ + Er+RR++++++++ Lr l+Pk +      K++ a+iL  A eYIk+L
  Ciclev10033428m 249 RAKNLITERNRRNKLKDGLFALRALVPKiS------KMDRAAILGDAAEYIKEL 296
                      6777899*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.748247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-15249309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-10249296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.48E-11249300No hitNo description
Gene3DG3DSA:4.10.280.101.9E-15251310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-13253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MRDLEKAVEW LRPFVDSKAW DYCVVWKLGD DPSSGGVGGG FEYVKVKEES GEEQKFSFCR  60
DAHLKHSART KACEALAQLP SFMDLYSGFL LHFNKVIECL SFNDKTTYLF QISKDQNIIE  120
LVLAHCNTSI EQRVVPAGSS YDVGLDEKCL DILLKENLQN FPSPLQLLTF VPGTQVLSAA  180
TQFNTHPYNE GSSRGSNPSI EHPSFDSNYG YIAQNAPLMQ PIGNSFAKRP KCKSHVFKEE  240
LGERHRLGRA KNLITERNRR NKLKDGLFAL RALVPKISKM DRAAILGDAA EYIKELLQEV  300
DKLQDELKEN EDCEKDNEEM KSFKLDEIHE GTSTTYLPAS EHNKSFPACG EKGKSEVRVE  360
VNQINDRDFL IKLLCEHERG GFVRLMEAIN SLELQVIDAN VTTFNGKVLN ILRVQAHKEN  420
IRLKKLRETL IELTG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438376.10.0hypothetical protein CICLE_v10033428mg
TrEMBLV4TP130.0V4TP13_9R
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.13e-49bHLH family protein