PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10032862m
Common NameCICLE_v10032862mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 184aa    MW: 20418.5 Da    PI: 7.9117
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10032862mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.31.7e-40231221100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+l+rkC + C++apyf +++pkkfa vhk+FGasnv+k+l+++pee+red+++sl+yeAear+rdPvyG++g i  lq+++ +l+++l
  Ciclev10032862m  23 SCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDL 116
                      6********************************************************************************************* PP

           DUF260  95 allkee 100
                      a+++++
  Ciclev10032862m 117 AVARAR 122
                      *99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.61422123IPR004883Lateral organ boundaries, LOB
PfamPF031955.8E-4023120IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MEDMKKWMCY KAMRGHEPRS SSSCAACKLL KRKCIPTCIF APYFRSDEPK KFAKVHKVFG  60
ASNVSKILTE VPEEQREDTV NSLAYEAEAR LRDPVYGCIG AIALLQRKMI ELQQDLAVAR  120
ARLARYTTPA ASSCAVLNDL CVGGSPAFSD LAACGDFFDS FSQNSLELNR VGDMYDFSQV  180
PYM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-48181266114LOB family transfactor Ramosa2.1
5ly0_B1e-48181266114LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435777.11e-135LOB domain-containing protein 21
RefseqXP_006486289.11e-135LOB domain-containing protein 21
SwissprotQ9SRL86e-67LBD21_ARATH; LOB domain-containing protein 21
TrEMBLV4T7091e-134V4T709_9ROSI; Uncharacterized protein
STRINGXP_006486289.11e-135(Citrus sinensis)
STRINGXP_006435777.11e-135(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102552735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.13e-69LOB domain-containing protein 21
Publications ? help Back to Top
  1. Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB
    Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
    Plant Physiol., 2007. 144(1): p. 32-42
    [PMID:17351049]