PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10032062m
Common NameCICLE_v10032020mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 334aa    MW: 37202.4 Da    PI: 6.0067
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10032062mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.66.9e-164695255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     r +h+  E+rRR++iN++f+ Lre++P++    ++K + a+ L +++eY+++Lq
  Ciclev10032062m 46 RSKHSVTEQRRRSKINERFQILREIIPHS----DQKRDTASFLLEVIEYVQYLQ 95
                     899*************************9....8*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.5424494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-2245116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-1845116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-134695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.77E-134699No hitNo description
SMARTSM003531.6E-1150100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MRTTKGNREE EEYEDDEFMS KKEAASNITN SNAKDGKNSD KASVIRSKHS VTEQRRRSKI  60
NERFQILREI IPHSDQKRDT ASFLLEVIEY VQYLQEKVQK YEVSYQDWSA EPTKLMPWRN  120
SHWRVQNFAT QPHAIKNGSG PGSMFPGKFD DNSISMSPTM LTSTQTPVES DPNRDIACKP  180
MDRQPEVANK GISISMPLQG NLPAPARSDS VLLHPLQRPV SDAQSNECPA TTDTMNQQEE  240
LTVDGGTINI SSIYSQGLLN NLTQALESAG IDLSQANISV QIDLGKRANR GLMPEASVAK  300
DLENPPSINQ AMAKLRDVSS GEDSDHSQKR LRK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437848.10.0hypothetical protein CICLE_v10032020mg
SwissprotQ9CAA41e-121BIM2_ARATH; Transcription factor BIM2
TrEMBLV4STA90.0V4STA9_9R
STRINGGLYMA02G13670.11e-153(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-118BES1-interacting Myc-like protein 2