PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10031873m
Common NameCICLE_v10031873mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 371aa    MW: 41598.1 Da    PI: 6.5862
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10031873mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.3e-08193240455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++ Lq
  Ciclev10031873m 193 SHSLAERVRREKISERMKILQKLVPGC----DKVTGKAFMLDEIINYVQFLQ 240
                      8*************************9....555****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-17187256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-9187244No hitNo description
Gene3DG3DSA:4.10.280.101.2E-16189254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.447189239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-6193240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9195245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MAAFSYQQHH HPFLLDSSEF IEEGSFFSQL YYPPKFPTHD DHQEMIVVNN NSNNLLDAAA  60
VFETSCGDNH DHHSDDNCNE PSNNNSLATK NQSTAVSSTE QQVTQSTVTT TATTTRMDKK  120
RKNRTNASSS FNSAQSKDPR EVKSKKQKKG NVNDAKKEEK ENSPKADSEK KVAKEPPKDY  180
IHVRARRGQA TDSHSLAERV RREKISERMK ILQKLVPGCD KVTGKAFMLD EIINYVQFLQ  240
NQVEFLSMKL ASVNPMFYDF GMDLDNTFMV RPDDQQNLNS IIAASASAPQ VQCSPTAQLT  300
AFADTTTAFA PADHRNNYPV LDTALLLQQG QRPNALIYQD NGNSLLWDVE DQKQRFLNPS  360
GFTSNLCSFN *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.198681e-146fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2408780.0EU240878.1 Citrus sinensis cultivar Moro Nucellare 58-8D-1 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436929.10.0hypothetical protein CICLE_v10031873mg
TrEMBLV4VCV70.0V4VCV7_9R
STRINGPOPTR_0012s10670.13e-96(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87962439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.26e-54bHLH family protein