PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10030860m
Common NameCICLE_v10030860mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARF
Protein Properties Length: 695aa    MW: 76001.5 Da    PI: 6.7126
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10030860mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3758.7e-24127228199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF   + 
  Ciclev10030860m 127 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGEVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RA 216
                      89****************************986445444..8999*********************************************..44 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++ l+v+++r+
  Ciclev10030860m 217 ENGDLCVGIRRA 228
                      88999****997 PP

2Auxin_resp120.21.6e-39289372183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      aa  a+++++FevvY+Prast+eFvvk++ v++a++++++ GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  Ciclev10030860m 289 AAALAANGQPFEVVYYPRASTPEFVVKASAVRAAMQIQWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPNSPWRLLQ 372
                      678899****************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.4E-38119233IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-29120227IPR015300DNA-binding pseudobarrel domain
CDDcd100174.06E-22126227No hitNo description
PfamPF023624.4E-22127228IPR003340B3 DNA binding domain
SMARTSM010199.0E-23127229IPR003340B3 DNA binding domain
PROSITE profilePS5086313.239127229IPR003340B3 DNA binding domain
PfamPF065072.0E-34289372IPR010525Auxin response factor
PROSITE profilePS5174519.717608688IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MITVMDSAKD AMKKNPTGES CLDSQLWHAC AGGMVQMPQI NSKVFYFPQG HLEHAKGNVE  60
LPNFNIPSMI PCRVTAIKFM ADAETDEVYA RIRLIALKSN GFDDFEDVGF DGNGGIGNES  120
SEKPASFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYSA EPPVQTILAK DVHGEVWKFR  180
HIYRGTPRRH LLTTGWSNFV NQKKLVAGDS IVFLRAENGD LCVGIRRAKK GGIGGGSDYS  240
VGWNSGGGNC GFPFGGYSGY MREDENKSSR RNSSSDLRGR VRAESVTEAA ALAANGQPFE  300
VVYYPRASTP EFVVKASAVR AAMQIQWCSG MRFKMAFETE DSSRISWFMG TISSVQVADP  360
IRWPNSPWRL LQVAWDEPDL LQNVKRVSPW LVELVSNIPA IHLSPFSPAR KKLRLPEHSD  420
FSLINQLPTP SFTRNPLVTS SPFCCISDNI PAGIQGARHA QYGLSSSDLH FNKLQSSLFP  480
LGFQQLEHTT RPARVSSANF MSETGNSKNI SCLLTMGNPT QSFKDNIEVK TPHIILFGQL  540
ILPQQNSSQS CSGDTIVNSL SDGNPEKTAI SSDGSGSAVH QNGPLENSSD EGSPWCKDHK  600
KSDLGLEMGH CKVFMESEDV GRTLDLSVLG SYEELYGKLA NMFGIESAEM FSNVLYRDAA  660
GSVKHTGDEP FSEFLKTARR LTILTDSGSD SVGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-84339332388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436433.10.0hypothetical protein CICLE_v10030860mg
RefseqXP_006485698.10.0PREDICTED: auxin response factor 16
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLV4SPI50.0V4SPI5_9R
STRINGPOPTR_0010s23000.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16