PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10030052m
Common NameCICLE_v10030052mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 314aa    MW: 34920.4 Da    PI: 4.7326
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10030052mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.4e-10130172855
                      HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       Er+RR ++++++  Lr l+P+ +      K++Ka+i   Av Y+++Lq
  Ciclev10030052m 130 SERKRRGKMKEKLYGLRALVPNiS------KMDKASIIGDAVSYLQELQ 172
                      6*********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-17120188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.91E-12120176No hitNo description
PROSITE profilePS5088815.04122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16124188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-7130172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDEFGNPLTL HAFIDDPNFD QFIDLIRGEN EDPLASFDCD LINGCFADTQ FIGSAQDDVF  60
GHFNGTAAGT MVSDDLTFVL NSSFPDLDGD MKGEHREEEN NGDDSSGATR TATTASTRNK  120
KADRSRTLVS ERKRRGKMKE KLYGLRALVP NISKMDKASI IGDAVSYLQE LQMQVRKLKA  180
EIASLEYSMA GSEKNQEPIQ KPKKTQVLSG NLQPICKKIM QIDVFQVEER RFYLRLVSSG  240
GQGVAVSLYK ALESLTSFDV QNFNFATEPE RLVLTFNLNV KDCEQNMNLP NLRLWVTGAL  300
LNQGFDVVTP FST*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006424447.10.0hypothetical protein CICLE_v10030052mg
SwissprotQ0V7X42e-95FIT_ARATH; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLV4SB320.0V4SB32_9R
STRINGPOPTR_0009s01100.11e-101(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41872857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.17e-92FER-like regulator of iron uptake