PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10029784m
Common NameCICLE_v10029784mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 315aa    MW: 34656.2 Da    PI: 6.3072
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10029784mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-10128173555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + + ErrRR ++++++  Lr l+P+      +K++Ka+i+  Av Y+++Lq
  Ciclev10029784m 128 ALISERRRRGKMKEKLYALRALVPNI-----TKMDKASIVGDAVLYVQDLQ 173
                      5678*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.085123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-15124187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-17125190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.26E-12125173No hitNo description
PfamPF000102.4E-8128173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-12129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDASAYPMMQ NKDFELHDFI DDPNIDQFID LIQGENEIPE PSFGCKFVSE CIVDNQIGST  60
GEDMFGFNGA GTLVSDLAFV HNSSLSGLNG DANGGVQEED NDGDDSSGRA RTTTTKCTKK  120
PKVDRSRALI SERRRRGKMK EKLYALRALV PNITKMDKAS IVGDAVLYVQ DLQMKAKKLK  180
TEIADLEASL TGAERQDQES TGNTKKTRVR SKKNPTCKKI MQMGVFQVEE RGFYVRLVCS  240
KGEGVAVSLY QALESLTSFS IQNSNLTTVS EKFVLTFTSS VRGSDQNMHL TNMKLWVTKA  300
LVNQGFEVLT PSSA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006424445.10.0hypothetical protein CICLE_v10029784mg
SwissprotQ0V7X42e-95FIT_ARATH; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLV4SFV80.0V4SFV8_9R
STRINGVIT_06s0061g00720.t011e-105(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41872857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.13e-81FER-like regulator of iron uptake