PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10028925m
Common NameCICLE_v10028925mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 304aa    MW: 33928.7 Da    PI: 8.2123
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10028925mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12132179355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Ciclev10028925m 132 QDHIIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 179
                      5699************************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.777129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-17133192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-17133191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-10133179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.68E-13134183No hitNo description
SMARTSM003533.6E-14135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEDLSFMNQW HMMNSIDEFN LLPLAAAFGE NLQQSYTHPS FNNNTGIDRP QKQLKTSTWN  60
SSETGFNPNN VSSINMNQMG ILKPKQETGA GYPSDILPSQ VSFGNNQNYV FKASQGAKRI  120
SPGAGNRLSN TQDHIIAERK RREKLSQRFI ALSAIVPGLK KMDKASVLGD AIKYLKQLQE  180
KVKILEEQAN KKTIESVVFV NKTQLSDEGE SPNGAFNEAL PEIEARFCDK SVLIRVHCEK  240
RKGVFEKIVA EIEKLYLTVI NSSVMTFGSS VLDVTIIAQM DVEFNMTVMD LVKNLHSAFQ  300
LFA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137142ERKRRE
2138143RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006422677.10.0hypothetical protein CICLE_v10028925mg
SwissprotQ9T0724e-65BH025_ARATH; Transcription factor bHLH25
TrEMBLV4S6A10.0V4S6A1_9R
STRINGPOPTR_0001s29400.11e-133(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-66bHLH family protein