PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027901m
Common NameCICLE_v10027901mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARF
Protein Properties Length: 725aa    MW: 79526.6 Da    PI: 7.2278
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027901mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.62.3e-23113214199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD++vF +   
  Ciclev10027901m 113 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLR--A 202
                      89****************************997556555..8************************************************4..3 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++ l+v+++r+
  Ciclev10027901m 203 QDGDLCVGIRRA 214
                      78888****996 PP

2Auxin_resp111.67.8e-37291374183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+  a+++++FevvY+Prast+eF+vk++ v++a++v++  GmRfkmafetedss++++ +Gt+++v+ +dp++WpnS+Wr+L+
  Ciclev10027901m 291 AVALAASGKPFEVVYYPRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFETEDSSRISWfMGTISSVQVADPISWPNSPWRLLQ 374
                      5678999***************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-37105216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.15E-28107216IPR015300DNA-binding pseudobarrel domain
CDDcd100172.32E-20112213No hitNo description
PROSITE profilePS5086312.844113215IPR003340B3 DNA binding domain
SMARTSM010197.7E-22113215IPR003340B3 DNA binding domain
PfamPF023621.5E-21113214IPR003340B3 DNA binding domain
PfamPF065071.7E-32291374IPR010525Auxin response factor
PROSITE profilePS5174517.361612692IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MKEVEKSIDP QLWHACAGSM VQIPPLNSTV FYFPQGHAEH SLGSVNFPSS SRIPPLIFCR  60
VSSLKFLADS ETDEVYAKIK LVPIPANEID FEDNNLSLNS VGSDSESEKP ASFAKTLTQS  120
DANNGGGFSV PRYCAETIFP RLDYTADPPV QTVVAKDVHG EIWKFRHIYR GTPRRHLLTT  180
GWSTFVNQKK LVAGDSIVFL RAQDGDLCVG IRRAKKGIGG GNESPSSGWN SNNGSCVTGN  240
PFGGFSCFLR EEENKMARNG NMNLNSYGSF NSSGNMRGNG GRVKPEMVLE AVALAASGKP  300
FEVVYYPRAS TPEFCVKASA VKAAMRVHWL CGMRFKMAFE TEDSSRISWF MGTISSVQVA  360
DPISWPNSPW RLLQVTWDEP DLLQNVKRVS PWLVELVSNM PVIHLSPFSP ARKKLRLPQQ  420
LDFPFDGQFT MPLFSGNPLG PSSPLCCLSD NTSAGIQGAR HAQFGISSSD FHVNNKLQSG  480
LFLSSLQRFT PNSRDSDGIL TSHTNSSENL SCLLTMGNSN QNLEKSENIK KHQFLLFGQP  540
ILTEQQISHS CSDDVVSQVL GKSSSDGHSD KVKASSDGSG SIHEQRISIE KSSSSEFFWN  600
RSFQVTESGL DTGHCKVFLE SEDVGRTLDL SVLSSYEELY RRLAIMFGIE RSDMLSHVLY  660
QDASGAIKRT GDEPFSDFMK SAKRLTILMG SGSDSVGRTW ITGMRTPKNG LDASNKTGPL  720
SIFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-70839551388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006424557.10.0hypothetical protein CICLE_v10027901mg
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLV4SBC20.0V4SBC2_9R
STRINGVIT_06s0004g02750.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10