PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10026458m
Common NameCICLE_v10026374mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 218aa    MW: 23940.2 Da    PI: 8.4283
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10026458mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26050.55.9e-16262156
           DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeered 56
                     +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe++r+ 
  Ciclev10026458m  2 SCNGCRVLRKGCSESCILRPCLqwiesPESQGHATVFVAKFFGRAGLMSFISAVPESQRPG 62
                     6*********************************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.4011106IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-12262IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIESPE SQGHATVFVA KFFGRAGLMS FISAVPESQR  60
PGLLWTGNWH VCQAAVETVL RGGTLRPVPE LLNSCGGSPT PTSDDVSEAE VTCTDMSRLQ  120
DRSFPSSHCR FSSSRSKVSP AKRKRVEESA MKLQQSDLDL RLTPRFTGKV PPEVRRRPGT  180
PSMNSEESGT TTCFESGLTD HRYLNGAEER KLLNLFV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.3000.0vegetative tissue
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM5967160.0HM596716.1 Citrus trifoliata clone Y2-H15 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426065.11e-154LOB domain-containing protein 38
SwissprotQ9SN232e-74LBD38_ARATH; LOB domain-containing protein 38
TrEMBLV4UIY61e-158V4UIY6_9ROSI; Uncharacterized protein
STRINGXP_006426065.11e-153(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.14e-68LOB domain-containing protein 37