PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10026220m
Common NameCICLE_v10026009mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 284aa    MW: 31376.9 Da    PI: 6.9281
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10026220mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.20.000342052431255
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Ciclev10026220m 205 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 243
                      6678889999999999998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.179193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-7203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.67E-6203247No hitNo description
SuperFamilySSF474591.96E-10203257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MMAGNPSWWS MHPLNPHQLS SSSSPSLFPS QYVHGSSSSF PFNSLPDSQD QHPQSWSQLL  60
LSGLPSDDDG FNSTPISHFH QPKKFESWED HHLQIINPYS SSRVDVVDDV KQEAPQANNL  120
YLHGPGEFQA TAASNWPQIM PLSPRSCVTS LSSNILDFSH TKPADKKNNQ QHPDHSSECN  180
STATRGVSKK ARVQTPSSQT PLKVRKEKLG DRITALHQLV SPFGKTDTAS VLLEAIGYIR  240
FLQGQIEALS SPYLSTSPSA SMRNQHCVST HEMVFLFIFQ SEP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1450106e-35BT145010.1 Lotus japonicus clone JCVI-FLLj-18O21 unknown mRNA.
GenBankBT0938726e-35BT093872.1 Soybean clone JCVI-FLGm-24O24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426931.10.0hypothetical protein CICLE_v10026009mg
TrEMBLV4SSS80.0V4SSS8_9R
STRINGPOPTR_0001s18660.11e-100(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.11e-29bHLH family protein