PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10026009m
Common NameCICLE_v10026009mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 340aa    MW: 37015.1 Da    PI: 7.0628
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10026009mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000442052431255
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Ciclev10026009m 205 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 243
                      6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.179193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-10203257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-7203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-5203247No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MMAGNPSWWS MHPLNPHQLS SSSSPSLFPS QYVHGSSSSF PFNSLPDSQD QHPQSWSQLL  60
LSGLPSDDDG FNSTPISHFH QPKKFESWED HHLQIINPYS SSRVDVVDDV KQEAPQANNL  120
YLHGPGEFQA TAASNWPQIM PLSPRSCVTS LSSNILDFSH TKPADKKNNQ QHPDHSSECN  180
STATRGVSKK ARVQTPSSQT PLKVRKEKLG DRITALHQLV SPFGKTDTAS VLLEAIGYIR  240
FLQGQIEALS SPYLSTSPSA SMRNQHCVHG DINGAFPEAP GQLLNDTCLK RKEAPNQDGQ  300
GKPKDLRSRG LCLVPLSCTQ QIGSDNGADF WAPALGGGF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1450107e-35BT145010.1 Lotus japonicus clone JCVI-FLLj-18O21 unknown mRNA.
GenBankBT0938727e-35BT093872.1 Soybean clone JCVI-FLGm-24O24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426930.10.0hypothetical protein CICLE_v10026009mg
SwissprotQ8S3D14e-71BH068_ARATH; Transcription factor bHLH68
TrEMBLV4SMT60.0V4SMT6_9R
STRINGVIT_09s0002g04120.t011e-127(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18722851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.13e-63bHLH family protein