PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10024422m
Common NameCICLE_v10024422mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 163aa    MW: 18599.5 Da    PI: 8.9269
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10024422mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.1e-11653655
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                       +Er RR+++ + +  Lr+llP       ++K s ++   +Av+YIk+Lq
  Ciclev10024422m  6 RDIERHRRQEMSTLYRSLRSLLPLeY---LKGKRSMSDHMNEAVNYIKNLQ 53
                     679*********************77...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.836152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.54E-8257No hitNo description
SuperFamilySSF474598.64E-14273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-10570IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-8653IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-4658IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MKIMRRDIER HRRQEMSTLY RSLRSLLPLE YLKGKRSMSD HMNEAVNYIK NLQNRIQKLS  60
EKRDELRRLS NSSSSPYYST TSESECSQTH INLEDSVTVR PCLAGVEVAI NTSFRKGIPL  120
SQVVALLAEE GLTVVNCIST KINERLLHNI ESEVIMLLCM GL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440484.11e-115hypothetical protein CICLE_v10024422mg
TrEMBLV4VLT61e-115V4VLT6_9R
STRINGPOPTR_0001s08380.16e-50(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29682767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.12e-38bHLH family protein