PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10024155m
Common NameCICLE_v10024155mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 146aa    MW: 16610 Da    PI: 9.4993
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10024155mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-083481455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     +h+ +Er RR +iN+++  L++++P +   + k +   ++L + ++Y++sLq
  Ciclev10024155m 34 SHSLAERVRRGKINERLRCLQDIVPGC---Y-KTMGMTMMLDEIINYVQSLQ 81
                     8*************************9...3.44777899********9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-162898IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-82885No hitNo description
Gene3DG3DSA:4.10.280.106.3E-163091IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.53080IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-63481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-73686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
NSGRRKRVKG NEKEEEKSKE VVHVRARRGQ ATDSHSLAER VRRGKINERL RCLQDIVPGC  60
YKTMGMTMML DEIINYVQSL QNQVEFLSMK LTAASTFYDF NSESDAVETM QKAKAYEAKE  120
MERLMKEGNF ACSSSSSFLT ITRPL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440991.11e-105hypothetical protein CICLE_v10024155mg, partial
SwissprotQ8GZ131e-64BEE1_ARATH; Transcription factor BEE 1
TrEMBLV4TWG11e-105V4TWG1_9R
STRINGGLYMA09G31580.28e-73(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29972765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.12e-62BR enhanced expression 3