PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10023545m
Common NameCICLE_v10023545mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-YC
Protein Properties Length: 117aa    MW: 12711.8 Da    PI: 10.2951
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10023545mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC106.71.4e-33201011898
            NF-YC  18 nhelPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                       h+lPlarikki+k + +dvkmis eaP+++skacelfi elt rsw  + + krrtl k d+a+av  tdifdfl+  v +
  Ciclev10023545m  20 THSLPLARIKKIMKkSGDDVKMISGEAPIVFSKACELFIEELTKRSWTMTMQGKRRTLLKDDVASAVIATDIFDFLLTLVSE 101
                      69***********825689*********************************************************988875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.47E-261495IPR009072Histone-fold
PfamPF008081.2E-202286IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.4E-3023100IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MRQAGTYSGL LSKMSGRAGT HSLPLARIKK IMKKSGDDVK MISGEAPIVF SKACELFIEE  60
LTKRSWTMTM QGKRRTLLKD DVASAVIATD IFDFLLTLVS ESGNNFNADA GQVNPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C8e-26219940117HapE
4g92_C8e-26219940117HapE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439560.19e-82hypothetical protein CICLE_v10023545mg
SwissprotQ9ZVL31e-32NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBLV4TMB81e-81V4TMB8_9R
STRINGVIT_02s0025g03770.t017e-56(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17140911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.36e-34nuclear factor Y, subunit C3