PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10022068m
Common NameCICLE_v10022068mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 231aa    MW: 24507.8 Da    PI: 7.927
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10022068mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.31.4e-294106198
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C ++C ++p++     p+ q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg++++++++l+q
  Ciclev10022068m   4 SCNGCRVLRKGCGENCSIRPCLqwiksPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQ 97 
                      6*************************99****************************************************************** PP

           DUF260  90 lkaelallk 98 
                      +++e++ ++
  Ciclev10022068m  98 AAVEAVFRG 106
                      ***998766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.4543109IPR004883Lateral organ boundaries, LOB
PfamPF031957.0E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MRVSCNGCRV LRKGCGENCS IRPCLQWIKS PQCQANATLF LAKFYGRAGL VNLINAGPQD  60
LRPAIFKSLL YEACGRIVNP IYGSVGLMWS GRWHLCQAAV EAVFRGEPVT PLSSESALQA  120
GDIRHVSKDE SSAAAAAGSD KLHKVKSRRF KRSAPKPRSK PERAADAKVV EPLLDNSGGE  180
STSCDPELTQ RDSGEGDSVS VETVEATLAK TDGGADGSDV DLELSLGFGI *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.84160.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440966.11e-169hypothetical protein CICLE_v10022068mg
SwissprotQ9M8861e-79LBD41_ARATH; LOB domain-containing protein 41
TrEMBLV4TWE01e-169V4TWE0_9R
STRINGVIT_17s0000g03720.t012e-95(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1802789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-77LOB domain-containing protein 41