PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021483m
Common NameCICLE_v10020360mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 290aa    MW: 33777.5 Da    PI: 6.9583
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021483mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.7e-11210254144
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC....TTS-STCHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkas.kapskKlsKaeiL 44 
                      +r++h ++Er+RR+++N+ +++Lr+l+P+a+ +  ++ ++ +++L
  Ciclev10021483m 210 QRMTHIAVERNRRRQMNDHLNTLRSLMPPAYvQRVKQSNNPSDVL 254
                      79***************************6523333335555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.8E-9208257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.12E-8208259No hitNo description
SuperFamilySSF474592.47E-9209259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.347209264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-9210257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEKLQGPINP YFLGDHLSVE CFEQEFINTG ALRFEFEEED EEGPQFTTTP SLEDKMPFLQ  60
MLQSVGTPSV FPFKEPNFQT LLRLQHLKKP WELVSPFMPE MEETQIQALE FESCVTQETL  120
DLHSPVKLET KDLQNPHSVT SCIEGLSSES NQEHIQVQPN SDSVINITHP PQQQIRAKQS  180
QFSKSPPITR EKRKRKRTKP IKNKEEVESQ RMTHIAVERN RRRQMNDHLN TLRSLMPPAY  240
VQRVKQSNNP SDVLNITTKV SFFLSFPSYY ISLKIRFLFS IFFGWWFKG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192199RKRKRTKP
2210221RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.15480.0flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444718.10.0hypothetical protein CICLE_v10020360mg
TrEMBLV4TCA20.0V4TCA2_9R
STRINGPOPTR_0014s10190.16e-76(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.19e-29bHLH family protein