PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10020575m
Common NameCICLE_v10020575mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 385aa    MW: 43282.7 Da    PI: 6.8757
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10020575mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.86.9e-24953145
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     kr e++snrqvt+skRrngilKKA ELS+LCd+++ +++fs+tg+
  Ciclev10020575m  9 KRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGR 53
                     689****************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-31160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.833161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-26295IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-20323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-201154IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-203859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MGRVKLKIKR LESTSNRQVT YSKRRNGILK KARELSILCD IDIVLLMFSP TGRSTLFHGQ  60
RSNIEEVIAR FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFLGAS TQTVEELTHQ  120
VRILQAQLTE VHQRLRQKHL PCECANQGAD EGFKRSYRAC YWSNPGNIES IEHLRQMENS  180
LRESINQICL HKENFGKQQL MSLEFAGQSG MHLPLMMNGM QENQSLSWLP NNDNQHMLVP  240
NDPSFLPQRD MGCSEDAHIS SYSGFLGAGK EIEVGNSGQA ENMEHGGGNL NELSNSACIS  300
LQLGEQYSYP PYSSLNLPSD DKKLKPDAEM NLQGNPAVFQ VNSNFELSGP MYGNGHHDWV  360
SASGPCGIAM FDENSYHQQT NRLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-15192190Myocyte-specific enhancer factor 2B
1tqe_Q5e-15192190Myocyte-specific enhancer factor 2B
1tqe_R5e-15192190Myocyte-specific enhancer factor 2B
1tqe_S5e-15192190Myocyte-specific enhancer factor 2B
6c9l_A5e-15192190Myocyte-specific enhancer factor 2B
6c9l_B5e-15192190Myocyte-specific enhancer factor 2B
6c9l_C5e-15192190Myocyte-specific enhancer factor 2B
6c9l_D5e-15192190Myocyte-specific enhancer factor 2B
6c9l_E5e-15192190Myocyte-specific enhancer factor 2B
6c9l_F5e-15192190Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024954645.10.0agamous-like MADS-box protein AGL65 isoform X2
SwissprotQ7X9I01e-107AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLV4VM260.0V4VM26_9ROSI; Uncharacterized protein
STRINGXP_006440614.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59332543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.11e-103AGAMOUS-like 65
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]