PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10019816m
Common NameCICLE_v10019816mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 503aa    MW: 55660.6 Da    PI: 6.5779
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10019816mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.8e-13357403455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Ciclev10019816m 357 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 403
                      799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.4E-4549231IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-18356422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.52E-14356407No hitNo description
Gene3DG3DSA:4.10.280.102.7E-18357423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-10357403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-14359408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00772438500No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MAEKFWTKEE DKAMVESVLG TEACEFLIKS AANNVMAELF TPPGDLGVHQ RLCQVVEGSN  60
WNYAIYWHAS NLKSGGSALI WGDGHCRDPK DGAVGGGKSS GVNKVDEVER KEEVKKRVLQ  120
KLHACFGGLE NYASRFDGVS GVEMFYLTSM YFNFRCDSAY GPGHAYKSGR SIWTSGIVSC  180
SDHYESRSFL AMSAGFQTVV FVPAKSGVVE LGSVKLIPEE QNVVEMVKTV FEGSSSVQTK  240
VFPKIFGHEL SLGGSKSQSI SINFSPKVED ELNFASDSYE IQAIGSNQVY GNSSNRCRSE  300
DEAKLFPHLN QMIVGGFDAQ ARVSSLEQKD DSSPQGDDRK PRKRGRKPAN GREEPLNHVE  360
AERQRREKLN QRFYALRAVV PNISKMDKAS LLGDAITYIT DLQMKIRVLE TEKDMSNNKQ  420
KQISVPEIDF QPRHEDAVVR VSCPLDDHPV SSVMKTFSEH QIVAQESNVS TTEDKVIHTF  480
SIQTQSGASE QLKEKLLAAL SK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A5e-13482319192Transcription factor MYC3
4rs9_A5e-13482319192Transcription factor MYC3
4rqw_B5e-13482319192Transcription factor MYC3
4rqw_A5e-13482319192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1338346RKPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443887.10.0hypothetical protein CICLE_v10019816mg
RefseqXP_006479569.10.0PREDICTED: transcription factor bHLH3
SwissprotO234870.0BH003_ARATH; Transcription factor bHLH3
TrEMBLV4TUI20.0V4TUI2_9R
STRINGPOPTR_0002s04310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66112741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-170bHLH family protein