PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10019749m
Common NameCICLE_v10019749mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 516aa    MW: 57161.2 Da    PI: 5.1927
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10019749mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-12343388454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  Ciclev10019749m 343 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYIREL 388
                      799***********************6.....4****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.4E-5326216IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.4E-17339403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.282339388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.19E-14342389No hitNo description
PfamPF000104.0E-10343388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-16343404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-15345394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MEDLIISPSS SSSLVSLTPE TPPPTLQQRL QFIVQSQPEW WAYAIFWQTI SNDDNGQLFL  60
AWGDGHYQGT KDASPRARMS MPAPAPGAAL DNNMERKRAI SSIRGIQQSF MGHEMDLSMM  120
DGGDVTDTEW FYVMSLTRSF GAGVGIPGRA QSSGSLVWLT GSHELQFYNC ERAKEAQSHG  180
IETFVCIPTS CGVLELGSSD LIRENWGLVH QVKSLFGSDL ITKPLNPNPT PAAPPMHFLD  240
RNISFADIGI IAGVQQEEEE EEEEEEELSR PEEEDQNKVK KPRKDQGCTV KSSTGQSSYT  300
VDSEHSDSDC PLPPPVNNIS AVEKRTPKKR GRKPGLGRET PLNHVEAERQ RREKLNHRFY  360
ALRAVVPNVS RMDKASLLSD AVSYIRELKV KIDDLESQLL QRESKKVKLE ISDNHSTTTS  420
VDQARPSSAG SGGGFNLEVE TKIMGSDAMI RVQSENVNHP AAKLMSSLRD LDLQLHHASM  480
SCVNDLMLQD IVVRVPDGLR TEDALRSALL RRLDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A3e-36192162192Transcription factor MYC3
4rs9_A3e-36192162192Transcription factor MYC3
4rqw_B3e-36192162192Transcription factor MYC3
4rqw_A3e-36192162192Transcription factor MYC3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.11140.0vegetative tissue
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444764.10.0hypothetical protein CICLE_v10019749mg
TrEMBLV4VX950.0V4VX95_9R
STRINGPOPTR_0002s17750.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.12e-50bHLH family protein