PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10017674m
Common NameCICLE_v10017674mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 170aa    MW: 19541.3 Da    PI: 8.8572
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10017674mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.90.00013471755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      +ErrRR+++ +++ +Lr+l+            Ka+i+e A+ YI +Lq
  Ciclev10017674m 34 TAERRRREKLSNRLLTLRSLMN-----------KATIVEDAITYIEKLQ 71
                     68*****************975...........559***********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-112486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.31E-72571No hitNo description
PROSITE profilePS508889.0392780IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-82790IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-43376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MEFLGSASTQ SCITQKRGRR VYGDDRDFKS KNLTAERRRR EKLSNRLLTL RSLMNKATIV  60
EDAITYIEKL QMTVKVLSDQ LLEMESSSEE SERPRNDEIN AAEEMKKHGI EEKVEVTNVD  120
GCKLWIRIIF EKKRSRITKF LEAMASHGFE LSDTNVTTFK GATLISSCLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13540ERRRRE
23641RRRREK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449158.11e-122hypothetical protein CICLE_v10017674mg, partial
TrEMBLV4TPF51e-122V4TPF5_9R
STRINGGLYMA15G06950.26e-49(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83582538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.14e-34bHLH family protein