PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10016381m
Common NameCICLE_v10016381mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 251aa    MW: 27465.2 Da    PI: 5.4446
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10016381mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.7e-1179125554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +  rE+ RRdr+N++f eL ++l +    + +K +Ka+iL  Av+ + +L
  Ciclev10016381m  79 KACREKLRRDRLNERFLELGSMLEPG---RPPKTDKATILSDAVQMMEQL 125
                      678**********************8...89***************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.24974125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.70E-978130No hitNo description
PfamPF000103.4E-978125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-1479145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-1080131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-1581148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEIASSDNSD WLIDYSIVDD IPIAGNFDWP SQAAPAVNAS SAASVTIDCS FGDSDGPKEV  60
EAGSRKRLRS ESCCVSGSKA CREKLRRDRL NERFLELGSM LEPGRPPKTD KATILSDAVQ  120
MMEQLRTEAQ KLKQSNENLQ EKIKELKGLD DHVQLSCCLS MQAEKNELRD EKQRLKADKE  180
KLQQQVKVMS APSGFLPHPS SMSAAFAAQS QVAGNKLVPF IGYPGVAMWQ FMPPAAVDTS  240
QDHVLRPPVA *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447467.10.0hypothetical protein CICLE_v10016381mg
RefseqXP_015382932.10.0PREDICTED: transcription factor ILR3-like isoform X1
SwissprotQ9FH372e-89ILR3_ARATH; Transcription factor ILR3
TrEMBLV4U4890.0V4U489_9R
STRINGVIT_12s0059g02650.t011e-118(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14372890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.17e-79bHLH family protein