PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10015674m
Common NameCICLE_v10015674mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family SRS
Protein Properties Length: 370aa    MW: 38733.4 Da    PI: 8.3026
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10015674mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702210.34.8e-651383004154
           DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstklss 93 
                       +++CqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpa++rrerq ++aaa++    +a    +++  k++   +  +++++s+t++s+
  Ciclev10015674m 138 SATTCQDCGNQAKKDCSHRRCRTCCKSRGFECSTHVKSTWVPASRRRERQLMAAAAATVGPGAAgssgSTSGIKKP---RLISSQTTSHTSTSN 228
                      5679*********************************************999888777665555332333334444...445777788899999 PP

           DUF702  94 aeskkeletss..........lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
                      ++++++++t+s          lP +++++avf+cvrv++v+d ge+e+aYq++v+igGhvfkG+LydqG+++
  Ciclev10015674m 229 TTPPRSFDTTSshqdasfkesLPGQIRAPAVFKCVRVTAVEDnGEDEYAYQAVVKIGGHVFKGFLYDQGVDD 300
                      99999999998999**************************9989*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051429.1E-62140299IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.3E-26141183IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016249.8E-30250298IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGMFVVAPAS SFNHHHHHLH HHLHNHESSI NVNSSDPMAA QNAAAATALG VGVIPLLAAD  60
QDLLNNFNSR NNNKVSQIQF WQQNQNSHHQ YFKKPAAASS SSTFLEHHNN FIPSGAVTVA  120
AASGGGNNNS NNIAGCSSAT TCQDCGNQAK KDCSHRRCRT CCKSRGFECS THVKSTWVPA  180
SRRRERQLMA AAAATVGPGA AGSSGSTSGI KKPRLISSQT TSHTSTSNTT PPRSFDTTSS  240
HQDASFKESL PGQIRAPAVF KCVRVTAVED NGEDEYAYQA VVKIGGHVFK GFLYDQGVDD  300
HHHQTREGFP NMAELHLGGG ASSSGPGGSG NGGKNAACSS SPNILDPSDV YAASAGGFLG  360
GSTYGNPIN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446278.10.0hypothetical protein CICLE_v10015674mg
SwissprotQ94CK95e-79LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLV4TGL80.0V4TGL8_9R
STRINGGLYMA02G44860.21e-107(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58832646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.22e-65Lateral root primordium (LRP) protein-related