PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10015052m
Common NameCICLE_v10015052mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 488aa    MW: 53696.1 Da    PI: 5.2326
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10015052mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.4e-11307349754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  Ciclev10015052m 307 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 349
                      79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.682300349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16303368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-9306349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14306355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15307362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-12307353No hitNo description
CDDcd048732.17E-7416457No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MVLEPNGAVW MEGEEEQPLS VSWTTAAAAT ATTTARATTE PKEDEMHVNA VSLSGFKSIL  60
DTDWFLNSTL NNPPQDFTNT TGLLETHQEL RAFNAFQETN LFFQPIESHP FTLNPTHSLL  120
PPNNNDNNSN SHLPFVSGFD LGGEAAGFIQ PASGFMGLTT TQICATNDSD FHGFGSSYSN  180
CFDNLEGLFF NSNSKAKVCS QSQPTLFEKR AALRQSSGKL ENLEILGGNL LLENIKCRKN  240
EEASVDISSL NYESDEYNNN NNNNNASNDN NVNGKVDESV KNWNAGGSAT VGDNKGKRKG  300
LPAKNLMAER RRRKKLNDRL YMLRSVVPKI SKMDRASILG DAIDYLKELL QRINDLHNEL  360
ESTPTGSLMQ PSTSIQPMTP TPPTLPCRVK EEISRSPTGE AARVEVRIRE GRAVNIHMFC  420
ARRPGLLLST MRALDSLGLD IQQAVISCFN GFALDVFRAE QCREGQDVLP KQIKSVLLDT  480
AGFHDVM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1296314KRKGLPAKNLMAERRRRKK
2308315ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5126450.0JX512645.1 Citrus trifoliata bHLH mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446948.10.0hypothetical protein CICLE_v10015052mg
RefseqXP_006446949.10.0hypothetical protein CICLE_v10015052mg
RefseqXP_006468882.10.0PREDICTED: transcription factor ICE1
RefseqXP_015382765.10.0PREDICTED: transcription factor ICE1
SwissprotQ9LSE21e-122ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A067DWI30.0A0A067DWI3_CITSI; Uncharacterized protein
TrEMBLV4W2Q30.0V4W2Q3_9R
STRINGVIT_14s0068g01200.t011e-131(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19522782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-109bHLH family protein